Helical antimicrobial polypeptides developed recently have the potential to become broad spectrum antibiotic

Bacteria have many methods of adapting to resist antibiotics, but a new class of spiral polypeptides developed at the University of Illinois are a fitting solution to this problem. The polypeptides, which are short protein chains, act as bacterial outer membrane hole-punchers, perforating the bacterial membrane until the cell falls apart. The antimicrobial agents are dressed for their mission in a positively charged shell that lets them travel in body fluids, protected from interacting with other proteins, and also attracts them to bacterial membranes.

Materials science and engineering professor Jianjun Cheng and his colleagues who did work on this published their findings in the Proceedings of the National Academy of Sciences recently.

When a patient has an infection, doctors usually try and use several antimicrobial agents till they home in on the right one because they don't know which bacteria is infecting the person unless they test and also as many of these drugs can only treat only one class of bacteria. In order to solve this problem we need more broad-spectrum antimicrobial agents.

The new antimicrobial polypeptides are specially designed to fold into a rigid spiral resulting in a rodlike structure, ideal for punching holes in the bacterial membrane.

“We use a very set mechanism to puncture the bacterial membrane,” the researches said, “so the polypeptides don’t really care whether the bacteria are gram positive or gram negative. They just kill the bacteria independent of their other surface properties.”

Such structures have been investigated for various medical applications, but because they do not like water, they do not travel well in bodily fluids. In addition, other molecules in the cell could interact with the polypeptide to disrupt the spiral structure, making it ineffective in puncturing the membrane.

The Illinois researchers and their collaborators addressed these challenges by attaching positively charged ions to the backbone of the spiral, creating a protective shell around the polypeptide so that it is both water soluble and shielded from cross-reactions. The shielded spiral structures are inured to changes in temperature or pH, so they have a stability and predictability that similar agents lack. Furthermore, the positive shell has the advantage of targeting bacterial membranes while decreasing interaction with human cells.

At the molecular level, there are big differences between bacterial and human cells in the membranes. The cell membrane lipids in bacteria have a lot of negative charges, and this polypeptide is positive, so it interacts with the negatively charged bacterial membrane. But with human cells, the interaction is weaker.

Many drugs are very targeted, interacting with a particular protein or interfering with a particular pathway in the bacterial cell. Bacteria can develop resistance to the antibiotic by circumventing the specific target. Since the spiral structures simply poke holes in the physical structure of the membrane, it would be much harder for bacteria to form resistance. In addition, the new antimicrobial agents could be coupled with other, targeted drugs to enhance their effectiveness.

The polypeptides punch holes in the membrane, which makes it very easy for other drugs to go through and bypass some of the drug-resistant mechanisms. Together, they work even better than a single agent.

Because the proteins have a preset design, the researchers predict that scaling up production would not present significant challenges. The precursor elements are already manufactured at large scales and available commercially.

Next, the researchers will continue to improve the antimicrobial polypeptides, further decreasing interaction with human cells, and working to more specifically target pathogenic bacteria.

Source: http://www.pnas.org/content/112/43/13155.abstract