In their scientific publication, the researchers list the possible explanations for the lack of dark matter one by one. For example, AGC 114905 could have been stripped of dark matter by large nearby galaxies. Mancera Piña: "But there are none. And in the most reputed galaxy formation framework, the so called cold dark matter model, we would have to introduce extreme parameter values that are far beyond the usual range. Also with modified Newtonian dynamics, an alternative theory to cold dark matter, we cannot reproduce the motions of the gas within the galaxy."

According to the researchers, there is one more assumption that could change their conclusions. That is the estimated angle at which they think they are observing the galaxy. "But that angle has to deviate very much from our estimate before there is room for dark matter again," says co-author Tom Oosterloo (ASTRON).

Meanwhile, the researchers are examining a second ultra-diffuse dwarf galaxy in detail. If again observe no trace of dark matter in that galaxy, it will make the case for dark matter poor galaxies even stronger.

The research of Mancera Piña and colleagues is not an isolated case. Earlier, for example, the Dutch American Pieter van Dokkum (Yale University, U.S.) discovered a galaxy with hardly any dark matter. The techniques and measurements of Mancera Piña and colleagues are more robust.

No need for dark matter: resolved kinematics of the ultra-diffuse galaxy AGC 114905 arXiv:2112.00017 [astro-ph.GA] arxiv.org/abs/2112.00017 . Accepted for publication in Monthly Notices of the Royal Astronomical Society.

https://phys.org/news/2021-12-evidence-emerges-dark-matter-free-gal...

Part 2

**

How SARS-CoV-2 evades the immune system

Researchers have found SARS-CoV-2 can knock out an important molecular pathway linked to an immune complex called MHC class I. The finding should help scientists better understand how COVID-19 infection takes hold.

Scientists used a bioinformatics approach to look at how SARS-CoV-2, the virus that causes COVID-19, changes gene expression in the immune systems of COVID-19 patients compared to uninfected individuals. This is a useful way to look into the function of complicated cell signaling pathways that trigger immune responses to fight off harmful bacteria and viruses.

MHC (major histocompatibility complex) class I molecules are a central weapon in the immune response against viruses. When a virus infects a cell, the cell facilitates the expression of viral antigens on the surface of infected cells, drawing the attention of immune cells called cytotoxic T cells. These immune cells zero in on and destroy the infected cells, together with the invading virus inside them. In addition to analyzing gene expression in COVID-19 patients, the research team also infected human cell lines with the SARS-CoV-2 virus to validate their findings.

The results showed that a protein from the SARS-CoV-2 virus, called ORF 6, suppresses a host cell protein, called NLRC5, responsible for activating the MHC class I pathway.

The study showed this happens in two ways. ORF6 hampers cell signaling, which turns off the expression of NLRC5. ORF6 also blocks the function of NLRC5.

Other infectious viruses, including HIV and MERS, are known to also target the MHC class I pathway. Researchers believed that SARS-CoV-2 probably did as well, but this study is the first to unravel the mechanism.

"Without the activation of the MHC class I pathway, viruses in the infected cells are essentially hidden from the immune system. That helps to explain why SARS-CoV-2 virus persists in the body and why it keeps infecting others, leading to the pandemic.

Further research could help find and test drugs that block the activity of the ORF6 viral protein, to restore host cell ability to activate the major histocompatibility complex. If successful, such drugs could encourage the host immune system to clear the virus itself, effectively boosting immune responses.

Ji-Seung Yoo et al, SARS-CoV-2 inhibits induction of the MHC class I pathway by targeting the STAT1-IRF1-NLRC5 axis, Nature Communications (2021). DOI: 10.1038/s41467-021-26910-8

https://medicalxpress.com/news/2021-12-sars-cov-evades-immune.html?...

Researchers develop a world-first antibody-drug delivery system

Imagine this: a man-made crystal that can be attached to antibodies and then supercharge them with potent drugs or imaging agents that can seek out diseased cells with the highest precision, resulting in fewer adverse effects for the patient.

That is precisely what researchers  have developed: the world's first metal-organic framework (MOFs) antibody-drug delivery system that has the potential to fast-track potent new therapies for cancer, cardiovascular and auto-immune diseases.

The in vitro study showed that when MOF antibody crystals bind to their target cancer cells and if exposed to the low pH in the cells, they break down, delivering the drugs directly and solely to the desired area.   

The metal-organic framework, a mixture of metal (zinc) and carbonate ions, and a small organic molecule (an imidazole, a colorless solid compound that is soluble in water) not only keeps the payload attached to the antibody but can also acts as a reservoir of personalized therapeutics. This is a benefit with the potential to become a new medical tool to target specific diseases with customized drugs and optimized doses.

With just 0.01 per cent of chemotherapy currently reaching the cancer tissue, this revolutionary new method can boost the potency of the drugs reaching their target.

With over 80 different monoclonal antibodies approved for clinical use, this approach has enormous potential to improve these antibodies for the targeted delivery of diagnostic agents and therapeutic drugs. The goal is that ultimately the clinical translation of this technology will improve the quality of life for patients suffering from serious diseases.

Karen Alt et al, Self‐Assembly of Oriented Antibody‐Decorated Metal‐Organic Framework Nanocrystals for Active Targeting Applications, Advanced Materials (2021). DOI: 10.1002/adma.202106607

https://phys.org/news/2021-12-world-first-antibody-drug-delivery.ht...

Transverse sound wave discovered

The physics textbooks tell us there are two kinds of waves. In transverse waves like light, the vibrations are perpendicular to the direction of wave propagation. In longitudinal waves like sound, the vibrations are parallel to the direction of wave propagation. But the latest discovery by scientists  changes this understanding of sound waves.

Imagine sound traveling in the same way as light does.

A research team  has discovered a new type of sound wave: The airborne sound wave vibrates transversely and carries both spin and orbital angular momentum like light does. The findings shattered scientists' previous thinking about the sound wave, opening an avenue to the development of novel applications in acoustic communications, acoustic sensing and imaging.

While the airborne sound is a longitudinal wave in usual cases,  this new study demonstrated for the first time that it can be a transverse wave under certain conditions. And physicists  investigated its spin-orbit interactions (an important property only exists in transverse waves), i.e. the coupling between two types of angular momentum. The finding provides new degrees of freedom for sound manipulations.

The absence of shear force in the air, or fluids, is the reason why sound is a longitudinal wave .  Researchers had been exploring whether it is possible to realize transverse sound, which requires shear force. Then they conceived the idea that synthetic shear force may arise if the air is discretized into "meta-atoms," i.e., volumetric air confined in small resonators with size much smaller than the wavelength. The collective motion of these air "meta-atoms" can give rise to a transverse sound on the macroscopic scale.

Shubo Wang et al, Spin-orbit interactions of transverse sound, Nature Communications (2021). DOI: 10.1038/s41467-021-26375-9

https://phys.org/news/2021-12-physicists-special-transverse.html?ut...

Evidence emerges for dark-matter free galaxies

 An international team of astronomers has found no trace of dark matter in the galaxy AGC 114905, despite taking detailed measurements over a course of forty hours with state-of-the-art telescopes.

When Researchers discovered six galaxies with little to no dark matter, they were told "measure again, you'll see that there will be dark matter around your galaxy". However, after forty hours of detailed observations using the Very Large Array (VLA) in New Mexico (United States), the evidence for a dark matter-free galaxy only became stronger.

The galaxy in question, AGC 114905, is about 250 million light-years away. It is classified as an ultra-diffuse dwarf galaxy, with the name 'dwarf galaxy' referring to its luminosity and not to its size. The galaxy is about the size of our own Milky Way but contains a thousand times fewer stars. The prevailing idea is that all galaxies, and certainly ultra-diffuse dwarf galaxies, can only exist if they are held together by dark matter.

The researchers collected data on the rotation of gas in AGC 114905 for 40 hours between July and October 2020 using the VLA telescope. Subsequently, they made a graph showing the distance of the gas from the center of the galaxy on the x-axis and the rotation speed of the gas on the y-axis. This is a standard way to reveal the presence of dark matter. The graph shows that the motions of the gas in AGC 114905 can be completely explained by just normal matter.

In their scientific publication, the researchers list the possible explanations for the lack of dark matter one by one. For example, AGC 114905 could have been stripped of dark matter by large nearby galaxies.

But there are none. And in the most reputed galaxy formation framework, the so called cold dark matter model, they would have to introduce extreme parameter values that are far beyond the usual range. Also with modified Newtonian dynamics, an alternative theory to cold dark matter, they cannot reproduce the motions of the gas within the galaxy.

According to the researchers, there is one more assumption that could change their conclusions. That is the estimated angle at which they think they are observing the galaxy. But that angle has to deviate very much from their estimate before there is room for dark matter again.

Meanwhile, the researchers are examining a second ultra-diffuse dwarf galaxy in detail. If again observe no trace of dark matter in that galaxy, it will make the case for dark matter poor galaxies even stronger.

https://researchnews.cc/news/10404/Evidence-emerges-for-dark-matter...

**

The World's Most Dangerous Blood Type

Scientists Observe Quantum Spin Liquids: A State of Matter We've Never Seen Before

An exotic and totally new state of matter called a quantum spin liquid has been hypothesized for decades, and now scientists have been able to observe it in a laboratory for the first time.

The 'liquid' part refers to electrons that are constantly changing and fluctuating inside a magnetic material at low temperatures. Unlike regular magnets, in this case the electrons don't stabilize or settle into the structured lattice of a solid as they are cooled.

The 'quantum spin' refers to orientation of angular momentum (up or down) carried by particles, which are entangled in pairs with opposing spins. Now that the state has been observed for the first time, it's hoped that the discovery can advance progress in the development of quantum computers.

Normal magnets feature electrons whose spin is orientated in the same direction either up or down, which is what generates magnetism.

In quantum spin liquids, a third electron is introduced, so while two opposing spins will stabilize each other, the spin from the third electron throws out the balance. It creates a 'frustrated' magnet where the spins can't all stabilize in one direction.

To produce their own frustrated lattice pattern, the team used a programmable quantum simulator built in 2017. The simulator uses a quantum computer program to hold atoms in custom shapes using lasers – like squares, triangles, or honeycombs – and can be used to engineer different quantum interactions and processes.

The simulator uses tightly focussed laser beams to arrange atoms individually, and by arranging the atoms of rubidium in a triangle-patterned lattice the researchers were able to produce a frustrated magnet with properties of quantum entanglement – where changes in one atom are matched in a second entangled atom.

The connections between the atoms indicated that a quantum spin liquid had indeed been created.

https://www.science.org/doi/10.1126/science.abi8794

https://www.sciencealert.com/scientists-document-quantum-spin-liqui...

Blood from marathoner mice boosts brain function in their couch-potato counterparts

Physical exercise is great for a mouse's brain, and for yours. Numerous studies conducted in mice, humans and laboratory glassware have made this clear. Now, a new study shows it's possible to transfer the brain benefits enjoyed by marathon-running mice to their couch-potato peers.

Researchers have shown that blood from young adult mice that are getting lots of exercise benefits the brains of same-aged, sedentary mice. A single protein in the blood of exercising mice seems largely responsible for that benefit.

The discovery could open the door to treatments that—by taming brain inflammation in people who don't get much exercise—lower their risk of neurodegenerative disease or slow its progression.

Researchers compared blood samples from exercising and sedentary mice of the same age. They showed that transfusions of blood from running mice reduced neuroinflammation in the sedentary mice and improved their cognitive performance. In addition, the researchers isolated a blood-borne protein that appears to play an important role in the anti-neuroinflammatory exercise effect.

Neuroinflammation has been strongly tied to neurodegenerative diseases in humans.  Animal studies have indicated that neuroinflammation precipitates neurodegenerative disorders and that reversing or reducing neuroinflammation can prolong cognitive health

part1

Removing a single protein, clusterin, from marathoner mice's plasma largely negated its anti-inflammatory effect on sedentary mice's brains. No other protein the scientists similarly tested had the same effect.

Clusterin, an inhibitor of the complement cascade, was significantly more abundant in the marathoners' blood than in the couch potatoes' blood.

Further experiments showed that clusterin binds to receptors that abound on brain endothelial cells, the cells that line the blood vessels of the brain. These cells are inflamed in the majority of Alzheimer's patients

Research has shown that blood endothelial cells are capable of transducing chemical signals from circulating blood, including inflammatory signals, into the brain.

Tony Wyss-Coray, Exercise plasma boosts memory and dampens brain inflammation via clusterin, Nature (2021). DOI: 10.1038/s41586-021-04183-x. www.nature.com/articles/s41586-021-04183-x

https://medicalxpress.com/news/2021-12-blood-marathoner-mice-boosts...

Part 2

Plants buy us time to slow climate change—but not enough to stop it

Plants take up carbon dioxide from the atmosphere and convert it into food, forests and other similar ecosystems are considered to be some of the planet's most important carbon sinks.

As human activities cause more carbon dioxide to be emitted into the atmosphere, scientists have debated whether plants are responding by photosynthesizing more and sucking up even more carbon dioxide than they already do—and if so, is it a little or a lot more. Now an international team of researchers led by Lawrence Berkeley National Laboratory (Berkeley Lab) and UC Berkeley have used a novel methodology combining remote sensing, machine learning, and terrestrial biosphere models to find that plants are indeed photosynthesizing more, to the tune of 12% higher global photosynthesis from 1982 to 2020. In that same time period, global carbon dioxide concentrations in the atmosphere grew about 17%, from 360 parts per million (ppm) to 420 ppm.

The 12% increase in photosynthesis translates to 14 petagrams of additional carbon taken out of the atmosphere by plants each year, roughly the equivalent of the carbon emitted worldwide from burning fossil fuels in 2020 alone. Not all of the carbon taken out of the atmosphere through photosynthesis is stored in ecosystems, as much is later released back to the atmosphere through respiration, but the study reports a direct link between the increased photosynthesis and increased global carbon storage. The study was published in Nature.

This is a very large increase in photosynthesis, but it's nowhere close to removing the amount of carbon dioxide we're putting into the atmosphere. It's not stopping climate change by any means, but it is helping us slow it down.

Trevor Keenan, A constraint on historic growth in global photosynthesis due to rising CO2 (N&V), Nature (2021). DOI: 10.1038/s41586-021-04096-9. www.nature.com/articles/s41586-021-04096-9

https://phys.org/news/2021-12-climate-changebut.html?utm_source=nwl...

A new view of the Universe

Engineers build in-pipe sewer robot

Scientists from the Division of Mechanical Science and Engineering at Kanazawa University developed a prototype pipe maintenance robot that can unclog and repair pipes with a wide range of diameters. Using a cutting tool with multiple degrees of freedom, the machine is capable of manipulating and dissecting objects for removal. This work may be a significant step forward for the field of sewerage maintenance robots.

Various sewer pipes that are essential to the services of buildings require regular inspection, repair, and maintenance. Current robots that move inside pipes are primarily designed only for visual surveying or inspection. Some robots were developed for maintenance, but they couldn't execute complicated tasks. In-pipe robots that can also clear blockages or perform complex maintenance tasks are highly desirable, especially for pipes that are too narrow for humans to traverse. Now, a team of researchers at Kanazawa University have developed and tested a prototype with these capabilities. 

This robot can help civic and industrial workers by making their job much safer. It can operate in small pipes that humans either cannot access or are dangerous.

Thaelasutt Tugeumwolachot et al, Development of a compact sewerage robot with multi-DOF cutting tool, Artificial Life and Robotics (2021). DOI: 10.1007/s10015-021-00694-y

https://techxplore.com/news/2021-12-in-pipe-sewer-robot.html?utm_so...

**

Scientists solve the grass leaf conundrum

Grass is cut regularly by our mowers and grazed on by cows and sheep, yet continues to grow back. The secret to its remarkable regenerative powers lies in part in the shape of its leaves, but how that shape arises has been a topic of longstanding debate. 

The debate is relevant to our staple crops wheat, rice and maize, because they are members of the grass family with the same type of leaf.

The mystery of grass leaf formation has now been unraveled by a research team.

Flowering plants can be categorized into monocots and eudicots. Monocots, which include the grass family, have leaves that encircle the stem at their base and have parallel veins throughout. Eudicots, which include brassicas, legumes and most common garden shrubs and trees, have leaves that are held away from the stem by stalks, termed petioles, and typically have broad laminas with net-like veins.

In grasses, the base of the leaf forms a tube-like structure, called the sheath. The sheath allows the plant to increase in height while keeping its growing tip close to the ground, protecting it from the blades of lawnmowers or incisors of herbivores. Using recent advances in computational modeling and developmental genetics, the team revisited the problem of grass development. They modeled different hypotheses for how grass leaves grow, and tested the predictions of each model against experimental results. To their surprise, they found that the model based on the 19^th century idea of sheath-petiole equivalence was much more strongly supported than the current view.

The grass study shows how simple modulations of growth rules, based on a common pattern of gene activities, can generate a remarkable diversity of different leaf shapes, without which our gardens and dining tables would be much poorer.

Annis Richardson et al, Evolution of the grass leaf by primordium extension and petiole-lamina remodeling, Science (2021). DOI: 10.1126/science.abf9407. www.science.org/doi/10.1126/science.abf9407

https://phys.org/news/2021-12-scientists-grass-leaf-conundrum.html?...

Why global tech turns to Indian talent

Twitter's new CEO Parag Agrawal is the latest alumnus of India's prestigious technical universities appointed to head a multi-billion-dollar US tech firm.

Google-parent Alphabet's 49-year-old CEO Sundar Pichai. Other Indians at the highest corporate tech echelons include IBM's Arvind Krishna and Palo Alto Networks' Nikesh Arora—both IIT alumni—along with Satya Nadella of Microsoft and Shantanu Narayen at Adobe.

If you ask why Indians are succeeding like hell, here is what the experts say:

beyond the South Asian nation's sheer size, the phenomenon is due to multiple push-pull factors and skillsets including a culture of problem-solving, the English language, and relentless hard work. 

after growing up with multiple communities, customs and languages, Indians have the ability to "navigate complex situations".

"Educational competition in India and societal chaos helps hone their skills in addition to the rigorous technical education at the IITs.

Silicon Valley demands technical expertise, managing diverse communities, and entrepreneurship in the face of uncertainty from its top executives.

"In innovation, you have to be able to break the rules, you're fearless. And... you can't survive a day in India without having to break one rule or the other or dealing with incompetent bureaucracy or corruption. Those skills are very useful when you're innovating in Silicon Valley, because you have to constantly challenge authority. The contest for such prizes begins early in a country of more than 1.3 billion people with a longstanding focus on education.

Agrawal, Pichai and Nadella spent a decade or more working their way through the ranks of their respective companies, building up insider knowledge while gaining the trust of the firms' American founders.

And for years, more than half the applicants for US H1-B skilled immigrant visas have been from India, and mostly from the tech sector.

The phenomenon may wane in time as India's own tech sector thrives, offering the country's best and brightest minds greater domestic opportunities.

https://techxplore.com/news/2021-12-global-tech-indian-talent.html?...

New prime editing system inserts entire genes in human cells

Researchers  have developed a new version of prime editing that can install or swap out gene-sized DNA sequences. First developed in 2019, prime editing is a precise method of making a wide diversity of gene edits in human cells, including small substitutions, insertions, and deletions.

In a study published recently in Nature Biotechnology, the team describes twin prime editing (twinPE), a technique that makes two adjacent prime edits to introduce larger sequences of DNA at specific locations in the genome with few unwanted byproducts. With further development, the technology could potentially be used as a new form of gene therapy to insert therapeutic genes in a safe and highly targeted manner to replace mutated or missing genes.

The researchers demonstrated the therapeutic potential of twinPE by editing, in human cells, a gene linked to Hunter syndrome, a rare genetic disorder. This disease is caused by an inversion of a specific 40,000 base pair long stretch of DNA. The team used twinPE to introduce an inversion of a similar length at the same site in the genome, showing how the method could be used to correct the disease-causing mutation. The team also used twin PE to precisely insert gene-sized DNA cargo of thousands of base pairs into therapeutically relevant sites in the genome.

The approach addresses a limitation of the original prime editing system, which can edit only several dozen base pairs. However, the study or treatment of some genetic diseases could require larger edits. Like the original prime editing method, twinPE also does not completely sever the DNA double helix by cutting both strands simultaneously at the same location, which can induce poorly controlled editing outcomes and harmful chromosomal abnormalities.

TwinPE could be a potentially safer and more precise way to insert whole genes of therapeutic interest into positions we specify, such as the location of the native gene in healthy individuals or 'safe harbor' sites thought to minimize the risk of side-effects.

Prime editing, developed by Liu's lab, enables DNA substitutions, insertions, and deletions, and promises to correct the majority of known disease-causing genetic variations. Recent improvements to prime editing technology increased its efficiency, edging it closer to therapeutic applications. But editing sequences longer than 100 base pairs remained inefficient.

Twin prime editing fills this gap. The system uses a prime editor protein and two prime editing guide RNAs, which guide the editing machinery and encode the edits. Each of the two guide RNAs direct the editing protein to make a single-stranded nick in the DNA at different targeted sites in the genome, avoiding the kind of double-strand break that creates unwanted byproducts in other methods. The system then synthesizes two new complementary DNA strands containing the desired sequence in between the two nicks. Using this approach, the researchers were able to insert, substitute, or delete sequences up to about 800 base pairs long.

Part 1

To edit even larger sequences, the researchers used their twin prime editing system to install "landing sites" in the genome for enzymes called site-specific recombinases, which catalyze the integration of DNA at specific sites in the genome. The team then treated the cells with a recombinase enzyme and introduced the long pieces of DNA they wanted to insert into the genome. Combining twinPE and recombinase enzymes allowed the scientists to edit sequences thousands of base pairs long—the length of entire genes.

 Andrew V. Anzalone et al, Programmable deletion, replacement, integration and inversion of large DNA sequences with twin prime editing, Nature Biotechnology (2021). DOI: 10.1038/s41587-021-01133-w

https://phys.org/news/2021-12-prime-inserts-entire-genes-human.html...

Inching closer towards "living biotherapeutics"

The human gut is home to thousands of species of bacteria, and some of those bacteria have the potential to treat a variety of gastrointestinal diseases. Some species may help to combat colon cancer, while others could help treat or prevent infections such as C. difficile.

One of the obstacles to developing these "living biotherapeutics" is that many of the species that could be beneficial are harmed by oxygen, making it difficult to manufacture, store, and deliver them. Chemical engineers have now shown that they can protect those bacteria with a coating that helps them to survive the manufacturing process.

In a study appearing today in the Journal of the American Chemical Society, the researchers showed they could use the coating on a strain of E. coli as well as another species that may aid in digestion of plant starches. The coating could be applied to many other species as well, they say. They think this coating could be used to protect pretty much any microbe of interest.

Most of the microbes that live in the human gut are anaerobic, and they have varying degrees of sensitivity to oxygen. Some can tolerate a little bit of oxygen, while for others, oxygen is deadly.

This makes it difficult to test their potential as treatments for human disease, because bacteria need to be freeze-dried and formulated as capsules in order to be used therapeutically. In this study, researchers decided to try protecting anaerobic bacteria by coating them with a material made from metal ions and organic compounds called polyphenols.

When polyphenols and metal ions are put into a solution, they form a two-dimensional, grid-like sheet. For this study, the researchers used iron, which is safe for human consumption, and three polyphenols that are all classified as GRAS (generally regarded as safe) : gallic acid, tannic acid, and epigallocatechin (EGCG), all of which are found in tea and other plant products.

If bacteria are also added to the solution, the material self-assembles into a coating on individual bacterial cells. This coating protects bacteria during the freeze-drying and manufacturing process. The researchers showed that the coated cells were healthy and able to perform normal cellular activities, although their growth was temporarily inhibited.

When exposed to an acidic environment, such as that of the stomach, the coating breaks down and releases the bacteria. Coating the bacteria with a protective layer could eliminate the need for cold storage and make distribution easier. This would make a lot of therapeutics more widely available.

Gang Fan et al, Protection of Anaerobic Microbes from Processing Stressors Using Metal–Phenolic Networks, Journal of the American Chemical Society (2021). DOI: 10.1021/jacs.1c09018

https://phys.org/news/2021-12-biotherapeutics.html?utm_source=nwlet...

Science with Webb: the nearby cosmos

Scientists Smash Temperature Record on Keeping 'Freezing Cold' Water in Liquid Form

Scientists have just proven that the freezing temperature of water can be even lower than what we thought was possible.

Taking tiny droplets of water, up to just 150 nanometers in size, a team of engineers at the University of Houston has pushed the critical temperature threshold to -44 degrees Celsius (-47.2 degrees Fahrenheit) – and, more saliently, accurately measured it.

common H₂O is actually pretty weird; it doesn't behave like any other liquid. Even the way it freezes is weird: where other liquids increase in density as they cool, water actually becomes less dense as it freezes.

Water's behavior has been fairly well characterized and studied. We know, for example, that it tends to nucleate, or form ice crystals, at a variety of temperatures, sometimes resisting the process as far as -38 degrees Celsius. Any colder, and even the most stubborn water molecules will stick together as ice.

pushed that temperature downwards by placing nanodroplets of water on a soft surface, like a gel or a lipid. Then, they probed the droplets using electrical resistance metrology and Fourier transform infrared spectroscopy to take their temperature as they froze.

The soft interface between the surface and the tiny droplet seemed to play a role in the suppression of ice nucleation, possibly because of the way the interface generates a large pressure on the droplet.

This is because the freezing temperature of water drops as ambient pressure rises. The most pronounced effect was seen in a droplet of water just 2 nanometers across.

If a water droplet is in contact with a soft interface, freezing temperature could be significantly lower than hard surfaces. And a few-nanometer water droplet could avoid freezing down to -44 degrees Celsius if it is in contact with a soft interface.

The way tiny water droplets freeze is vitally important to cryopreservation, since the freezing of tiny droplets within cells can cause those cells to rupture and die. Learning how to slow or halt that process could help scientists find ways to mitigate that effect. It could also help us better understand how nucleation happens in the atmosphere, where microscopic droplets of water freeze. And it could also help us to better design technology that suffers from ice exposure, such as aircraft and wind turbines.

https://www.nature.com/articles/s41467-021-27346-w

https://www.sciencealert.com/scientists-break-a-temperature-record-...

Synthetic Food Dyes and health risk

Early-onset colorectal cancer incidence among the young, defined as those under age 50, has been rising globally since the early 1990s. Rates for colon and rectal cancers are expected to increase by 90 percent and 124 percent, respectively, by 2030.

One suspected reason behind this trend is increased global consumption of a Westernized diet that consists heavily of red and processed meats, added sugar, and refined grains. Modern day diet is made up of ultra-processed food such as industrial baked sweets, soft drinks, and processed meat. It is associated with an increased risk of colorectal cancer.

One aspect of ultra-processed foods I'm concerned about is how colorful they are. This characteristic is on full display in many delicious foods and treats present during the year-end holidays.

However, many of the colours that make up candy canes, sugar cookies, and even cranberry sauce and roast ham, are synthetic. And there's some evidence that these artificial food dyes may trigger cancer-causing processes in the body.

Part 1

The food industry uses synthetic dyes because they make food look better. The first food dyes were created from coal tar in the late 1800s. Today, they are often synthesized from a chemical derived from petroleum called naphthalene to make a final product called an azo dye.

Food manufacturers prefer synthetic dyes over natural dyes like beet extract because they are cheaper, brighter, and last longer. While manufacturers have developed hundreds of synthetic food dyes over the past century, the majority of them are toxic. Only nine are approved for use in food under U.S. Food and Drug Administration policy, and even fewer pass European Union regulations.

What drives colorectal cancer?

DNA damage is the primary driver of colorectal cancer. When DNA damage occurs on cancer driver genes, it can result in a mutation that tells the cell to divide uncontrollably and turn cancerous.

Another driver of colorectal cancer is inflammation. Inflammation occurs when the immune system sends out inflammatory cells to begin healing an injury or capture disease-causing pathogens.

When this inflammation persists over time, it can harm otherwise healthy cells by releasing molecules called free radicals that can damage DNA.

Another type of molecule called cytokines can prolong inflammation and drive increased cell division and cancer development in the gut when there isn't an injury to heal.

Long-term poor dietary habits can lead to a simmering low-grade inflammation that doesn't produce noticeable symptoms, even while inflammatory molecules continue to damage otherwise healthy cells.

Part 2

Synthetic food dyes and cancer

Although none of the FDA-approved synthetic food colors are classified as carcinogens, currently available research points to potential health risks and   researchers  find this concerning.

For instance, the bacteria in your gut can break down synthetic dyes into molecules that are known to cause cancer. More research is needed on how the microbiome interacts with synthetic food coloring and potential cancer risk.

Studies have shown that artificial food dyes can bind to the DNA and proteins inside cells. There is also some evidence that synthetic dyes can stimulate the body's inflammatory machinery. Both of these mechanisms may pose a problem for colon and rectal health.

Synthetic food dyes have been found to damage DNA in rodents. This is supported by unpublished data from my research team showing that Allura Red, or Red 40, and Tartrazine, or Yellow 5, can cause DNA damage in colon cancer cells with increased dosages and length of exposure in vitro in a controlled lab environment.

Our results will need to be replicated in animal and human models before we can say that these dyes directly caused DNA damage, however.

Finally, artificial food coloring may be of particular concern for children. It's known that children are more vulnerable to environmental toxins because their bodies are still developing. I and others believe that this concern may extend to synthetic food dyes, especially considering their prevalence in children's food.

A 2016 study found that over 40 percent of food products marketed toward children in one major supermarket in North Carolina contained artificial food coloring. More research needs to be done to examine how repeated exposure to artificial food dyes may affect children.

A few treats during the holidays won't cause colorectal cancer. But a long-term diet of processed foods might. While more research is needed on the link between synthetic food dyes and cancer, there are evidence-based steps you can take now to reduce your risk of colorectal cancer.

One way is to get screened for colon cancer. Another is to increase your physical activity. Finally, you can eat a healthy diet with more whole grains and produce and less alcohol and red and processed meat. Though this means eating fewer of the colorful, ultra-processed foods that may be plentiful during the holidays, your gut will thank you in the long run.

https://theconversation.com/colorful-sweets-may-look-tasty-but-some...

Researchers discover how cells from tumors remain dormant for years before metastasis occurs

Researchers have solved a major mystery in cancer research: How cancer cells remain dormant for years after they leave a tumor and travel to other parts of the body, before awakening to create metastatic cancer.

According to findings reported in Nature Cancer in December, the cells remain quiet by secreting a type of collagen, called type III collagen, in the environment around themselves, and only turn malignant once the level of collagen tapers off. The researchers found that by enriching the environment around the cells with this collagen, they could force the cells to remain in a dormant state and prevent tumour recurrence.

Most cancer deaths are due to metastases, which can occur several years after a tumor is removed. Previous research has studied how dispersed tumor cells come out of dormancy; this new work showed how the cells remain dormant.

In patient samples, the researchers showed that an abundance of the collagen could be used as a potential measurement to predict tumor recurrence and metastasis. In the mouse models, when scientists increased the amount of type III collagen around cancer cells that had left a tumor, cancer progression was interrupted and the disseminated cells were forced into a dormant state. Similar to wound treatment, in which collagen scaffolds have been proposed as a therapeutic alternative for complex skin wounds, this study suggest that by using strategies that aim to enrich the tumor microenvironment in type III collagen, metastasis may be prevented by activating tumor cell dormancy.

Jose Bravo-Cordero, A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy, Nature Cancer (2021). DOI: 10.1038/s43018-021-00291-9. www.nature.com/articles/s43018-021-00291-9

https://medicalxpress.com/news/2021-12-cells-tumors-dormant-years-m...

New resistance-busting antibiotic combination could extend the use of 'last-resort' antibiotics

Scientists have discovered a new potential treatment that has the ability to reverse antibiotic resistance in bacteria that cause conditions such as sepsis, pneumonia, and urinary tract infections.

Carbapenems, such as meropenem, are a group of vital often 'last-resort' antibiotics used to treat serious, multi-drug resistant infections when other antibiotics, such as penicillin, have failed. But some bacteria have found a way to survive treatment with carbapenems, by producing enzymes called metallo-beta-lactamases (MBLs) that break down the carbapenem antibiotics, stopping them from working.

Highly collaborative research, conducted by scientists from the Ineos Oxford Institute (IOI) for Antimicrobial Research at the University of Oxford and several institutions across Europe, found that the new class of enzyme blockers, called indole carboxylates, can stop MBL resistance enzymes working leaving the antibiotic free to attack and kill bacteria such as E. coli in the lab and in infections in mice.

The researchers first screened hundreds of thousands of chemicals to see which would attach tightly to MBLs to stop them working, and which didn't react with any human proteins, leading to the discovery of the indole carboxylates as promising new candidates. Using a process called crystallography to zoom in to take a closer look at how they work, the researchers found these potential drugs attach to MBLs in a completely different way to any other drugs—they imitate the interaction of the antibiotic with the MBLs. This clever Trojan Horse trick allows these potential drugs to be highly effective against a very wide range of MBL-producing superbugs.

Jürgen Brem, Imitation of β-lactam binding enables -spectrum metallo-β-lactamase inhibitors, Nature Chemistry (2021). DOI: 10.1038/s41557-021-00831-x. www.nature.com/articles/s41557-021-00831-x

https://phys.org/news/2021-12-resistance-busting-antibiotic-combina...

Testing Mars Sample Return

Teams across multiple NASA centers and the European Space Agency are working together to prepare a set of missions that would return the samples being collected by the Mars Perseverance rover safely back to Earth. This video features some of that prototype testing underway for the proposed Sample Retrieval Lander, Mars Ascent Vehicle launch systems, and the Earth Entry System. Credit: NASA/JPL-Caltech

A longer-lasting COVID vaccine

Researchers have identified rare, naturally occurring T cells that are capable of targeting a protein found in SARS-CoV-2 and a range of other coronaviruses.

The findings suggest that a component of this protein, called viral polymerase, could potentially be added to COVID-19 vaccines to create a longer-lasting immune response and increase protection against new variants of the virus.

Most COVID-19 vaccines use part of the spike protein found on the surface of the virus to prompt the immune system to produce antibodies. However, newer variants — such as delta and omicron — carry mutations to the spike protein, which can make them less recognizable to the immune cells and antibodies stimulated by vaccination. Researchers say that a new generation of vaccines will likely be needed to create a more robust and wide-ranging immune response capable of beating back current variants and those that may arise in the future.

One way to accomplish this is by adding a fragment of a different viral protein to vaccines — one that is less prone to mutations than the spike protein and that will activate the immune system’s T cells. T cells are equipped with molecular receptors on their surfaces that recognize foreign protein fragments called antigens. When a T cell encounters an antigen its receptor recognizes, it self-replicates and produces additional immune cells, some of which target and kill infected cells immediately and others which remain in the body for decades to fight that same infection should it ever return.

The researchers focused on the viral polymerase protein, which is found not only in SARS-CoV-2 but in other coronaviruses, including those that cause SARS, MERS and the common cold. Viral polymerases serve as engines that coronaviruses use to make copies of themselves, enabling infection to spread. Unlike the spike protein, viral polymerases are unlikely to change or mutate, even as viruses evolve.

To determine whether or not the human immune system has T cell receptors capable of recognizing viral polymerase, the researchers exposed blood samples from healthy human donors (collected prior to the COVID-19 pandemic) to the viral polymerase antigen. They found that certain T cell receptors did, in fact, recognize the polymerase. They then used a method they developed called CLInt-Seq to genetically sequence these receptors. Next, the researchers engineered T cells to carry these polymerase-targeting receptors, which enabled them to study the receptors’ ability to recognize and kill SARS-CoV-2 and other coronaviruses.

The study was published online in the journal Cell Reports.

https://researchnews.cc/news/10477/A-longer-lasting-COVID-vaccine--...

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Using AI to Navigate Flow

Sodium-based material yields stable alternative to lithium-ion batteries

Researchers have created a new sodium-based battery material that is highly stable, capable of recharging as quickly as a traditional lithium-ion battery and able to pave the way toward delivering more energy than current battery technologies.

For about a decade, scientists and engineers have been developing sodium batteries, which replace both lithium and cobalt used in current lithium-ion batteries with cheaper, more environmentally friendly sodium. Unfortunately, in earlier sodium batteries, a component called the anode would tend to grow needle-like filaments called dendrites that can cause the battery to electrically short and even catch fire or explode.

Typically, the faster you charge, the more of these dendrites you grow. So if you suppress dendrite growth, you can charge and discharge faster, because all of a sudden it's safe.

 Yixian Wang et al, A Sodium–Antimony–Telluride Intermetallic Allows Sodium‐Metal Cycling at 100% Depth of Discharge and as an Anode‐Free Metal Battery, Advanced Materials (2021). DOI: 10.1002/adma.202106005

In one of two recent sodium battery advances from UT Austin, the new material solves the dendrite problem and recharges as quickly as a lithium-ion battery. The team published their results in the journal Advanced Materials.

https://techxplore.com/news/2021-12-sodium-based-material-yields-st...

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How NASA’s Webb Telescope Will Transform Our Place in the Universe

World's first optical oscilloscope

 A team from UCF has developed the world's first optical oscilloscope, an instrument that is able to measure the electric field of light. The device converts light oscillations into electrical signals, much like hospital monitors convert a patient's heartbeat into electrical oscillation.

Until now, reading the electric field of light has been a challenge because of the high speeds at which light waves oscillates. The most advanced techniques, which power our phone and internet communications, can currently clock electric fields at up to gigahertz frequencies—covering the radio frequency and microwave regions of the electromagnetic spectrum. Light waves oscillate at much higher rates, allowing a higher density of information to be transmitted. However, the current tools for measuring light fields could resolve only an average signal associated with a 'pulse' of light, and not the peaks and valleys within the pulse. Measuring those peaks and valleys within a single pulse is important because it is in that space that information can be packed and delivered.

Fiber optic communications have taken advantage of light to make things faster, but we are still functionally limited by the speed of the oscilloscope. This new  optical oscilloscope may be able to increase that speed by a factor of about 10,000.

The research team developed the device and demonstrated its capability for real-time measurement of the electric fields of individual laser pulses. The next step for the team is to see how far they can push the speed limits of the technique.

https://www.ucf.edu/news/ucf-develops-the-worlds-first-optical-osci...

https://researchnews.cc/news/10569/Team-develops-the-world-s-first-...

New Maze-Like Surface Kills Bacteria in 2 Minutes: 120x Faster Than Normal Copper

If dangerous 99.99 percent of bacteria can be killed within 2 minutes? That is exactly this porous copper maze can do!

A newly developed copper surface does the job in just a couple of minutes, though, some 120 times faster than normal copper. The less time the bacteria hang around, of course, the safer that surfaces like door handles and worktops are going to be.

Crucial to the bacteria-killing abilities of the new material is its porous nature, which significantly increases the surface area compared with smooth copper. That means more of the bacteria cells can be attacked at once when they land.

To make this copper as porous as possible, researchers produced an alloy of copper and manganese  atoms, before applying a cheap and scalable "dealloying" technique to remove the manganese atoms.

That left behind a maze-like copper surface full of very small holes for the bacteria to get trapped inside – and it actually makes it harder for bacteria cells to form in the first place.

No special drugs or other treatments are required for the copper material to work, and when water hits the surface, it forms a thin film rather than droplets. That again improves the effectiveness of the copper ions in wiping out bacteria.

These combined effects not only cause structural degradation of bacterial cells, making them more vulnerable to the poisonous copper ions, but also facilitates uptake of copper ions into the bacterial cells.

https://www.sciencedirect.com/science/article/abs/pii/S014296122100...

https://www.sciencealert.com/new-copper-surface-kills-bacteria-in-2...

Chemical Air Pollution Morphs Into Something Even More Toxic, Study Shows

Remnants of industrial chemicals in the air can potentially transform into new substances more toxic and persistent than the original pollution, according to a global study published recently.

Using samples gathered around the world, the study published in Nature found that these previously unidentified products are present in the atmospheres of 18 big cities around the world. The research proposes a new framework using laboratory tests and computer simulation to predict what chemicals will arise as products interact with the air and how toxic they will be.

They are chemicals that are added to a large variety of materials to delay the onset of fire. 

In a laboratory, scientists observed how these chemicals changed over time when in contact with oxidants in the air and found that they gave rise to 186 different substances.

Comparing these new substances with field samples, researchers  found 19 derived from the five most common flame retardants. None of the 19 had ever been identified in the ambient atmosphere before.

The researchers then used computer simulations to gauge the persistence, toxicity, and bio-accumulation of the derived chemicals.

They discovered that the new chemicals could have longer-lasting impacts on the environment and could be more toxic than their parent chemicals – in some cases 10 times as much.

https://www.nature.com/articles/s41586-021-04134-6

https://www.sciencealert.com/study-suggests-chemical-air-pollution-...

Visuals increase attention: science explains why

"Look at me!" we might say while attempting to engage  children. It turns out there is a neurochemical explanation for why looking at mom or dad or teacher actually helps kids pay better attention.

in a paper published recently scientists report that norepinephrine, a fundamental chemical for brain performance, is locally regulated in a brain region called the visual cortex.

Norepinephrine is known to be involved in paying attention. A certain amount of this chemical needs to be released for optimum brain performance and ability to pay attention. So, if there is either too much of it or too little of it, it may affect how we process information.

Disease states in which norepinephrine is known to be altered include substance use disorders, Alzheimer's disease, post-traumatic stress disorder (PTSD) and attention-deficit/hyperactivity disorder (ADHD). In some substance use, Alzheimer's and ADHD, the release of norepinephrine is reduced, resulting in lower attention. In other substance use and PTSD, the level is too high.

The team's findings also extend to cells called astrocytes that function as helper cells in the brain and central nervous system.

"When a person makes a movement, such as turning the head to listen to a parent, and that is combined with visual stimulation, then more norepinephrine is released where visual information is processed.

Astrocytes can reliably detect the rate of norepinephrine release. 

They are sensitive to it, in other words. Astrocytes alter their response accordingly, which is expected to change brain performance.

Understanding norepinephrine release, its local regulation and the astrocyte response may represent a mechanism by which one could enhance sensory-specific attention.

Shawn R. Gray et al, Noradrenergic terminal short-term potentiation enables modality-selective integration of sensory input and vigilance state, Science Advances (2021). DOI: 10.1126/sciadv.abk1378. www.science.org/doi/10.1126/sciadv.abk1378

https://medicalxpress.com/news/2021-12-visuals-attention-science.ht...

Pain and anxiety impact breathing on a cellular level

You're startled by a threatening sound, and your breath quickens; you smash your elbow and pant in pain. Why a person's breathing rate increases dramatically when they're hurting or anxious was not previously understood. Now, a team of Salk scientists has uncovered a neural network in the brain that coordinates breathing rhythm with feelings of pain and fear. Along with contributions to the fields of pain management, psychological theories of anxiety, and philosophical investigations into the nature of pain, their findings could lead to development of an analgesic that would prevent opioid-induced respiratory depression (OIRD), the disrupted breathing that causes overdose deaths.

Scientists  focused on a group of neurons in the brainstem called the lateral parabrachial nucleus, which is arranged in a core-shell configuration. They found that neurons in the core project to the amygdala, an area of the brain that processes fear and the emotional experience of pain. Neurons in the shell project to the pre-Bötzinger complex, a region that generates breathing rhythm. The core and shell neurons influence each other according to inputs from these areas, making us breathe faster when we experience pain or anxiety.

SungHan, Divergent brainstem opioidergic pathways that coordinate breathing with pain and emotions, Neuron (2021). DOI: 10.1016/j.neuron.2021.11.029. www.cell.com/neuron/fulltext/S0896-6273(21)00990-9

https://medicalxpress.com/news/2021-12-pain-anxiety-impact-cellular...

In last 15 years, deforestation made outdoor work unsafe for millions

The tropics is becoming hotter due to a combination of warming associated with deforestation and climate change—and that can reduce the ability of outdoor workers to perform their jobs safely. Researchers reporting in the journal One Earth on December 17 estimate how many safe working hours people living in the tropics have lost due to local temperature change associated with loss of trees during the past 15 years.

There is a huge disproportionate decrease in safe work hours associated with heat exposure for people in deforested locations versus people in forestated locations just over the past 15 or 20 years.

There is a small amount of climate change that has happened over the same 15-year period, but the increase in humid heat exposure for people living in deforested relative to forested locations was much larger than that from recent climate change.

Previous research has revealed deforestation is associated with an increase in local temperature. Trees block out the sun's radiation and provide shade. They also cool down the air via evapotranspiration, a process when plants transport water from the soil then evaporate water from the leaf surface, similar to how sweating cools the skin.

"The trees in the tropics seem to limit the maximum temperatures that the air can reach. Once we cut those trees down, we lose that cooling service from the trees, and it can get really, really hot. In the Brazilian Amazon, for example, where huge swaths of the rainforest have been cleared in the last 15 or 20 years, the afternoons can be up to 10 degrees Celsius warmer than forested regions.

The One Earth study went a step further and estimated the number of people who live in locations affected by warming associated with deforestation. Using satellite data and meteorological observations, Parsons and his team tracked the local temperature and humidity in 94 low-latitude countries with tropical forests, including countries in the Americas, Africa, and Asia, from 2003 to 2018.

They estimated that in recently deforested locations, almost 5 million people lost at least half an hour of safe work time per day—when the weather outside is too hot and humid to safely conduct heavy labor. Among them, at least 2.8 million people are outdoor workers that perform heavy physical work in the agriculture and construction sectors. Heavy physical work increases heat generated within the human body, which when combined with hot and humid environments, increases the risk of heat strain and heat-related illnesses, including heat stroke, which can be fatal.

Luke AParsons, Tropical deforestation accelerates local warming and loss of safe outdoor working hours, One Earth (2021). DOI: 10.1016/j.oneear.2021.11.016. www.cell.com/one-earth/fulltex … 2590-3322(21)00664-3

https://phys.org/news/2021-12-years-deforestation-outdoor-unsafe-mi...

Scientists unveil drug discovery tool to screen more than 11 billion compounds

Scientists unveil drug discovery tool to screen more than 11 billion compounds

On the surface of our cells are docking stations called receptors. All kinds of compounds from caffeine and dopamine to heroin, THC and LSD bind to these receptors. In fact, G protein-coupled receptors are the intended targets of more than 30 percent of pharmaceutical products currently on the market. But these drugs often hit unintended targets—think carpet bombing the nervous system—leading to the laundry list of side effects commonly heard at the end of pharmaceutical commercials.

What we need are more precise and less harmful treatments that are just as effective.

But creating these better drugs isn't easy. Drug developers need to know the exact chemical structure of a drug and the intended receptor to produce the exact chemical reaction we want inside cells. The kicker is to make sure the drug doesn't affect other receptors or bind to the target receptors but bind in such a way to trigger unintended consequences inside cells.

In the past, scientists would test molecules in a one-by-one fashion against a therapeutic target in a lengthy and expensive operation. So scientists created virtual libraries of molecules and fancy computer programs to test hundreds of thousands of molecules at a time. By "test" we mean that the computer program scoured a database of molecules that theoretically could be created and theoretically could bind with the proper affinity to a given cell receptor. And then scientists could tinker with chemical bonds in a computer program to optimize a molecule's structure. Then scientists could physically make a tiny sliver of these molecules and test them in cell cultures.

The creation of virtual libraries was a giant leap in the field. Testing hundreds of thousands of possible molecules, some of which might be candidates with properties worth investigating, sounds like a lot. But there are billions upon billions of possible chemical combinations that could theoretically lead to the creation of a near infinite number of molecules or potential drugs. As a result, scientists wound up creating vast libraries of theoretical compounds, billions of mostly "undiscovered" and unexplored molecules that may or may not bind to a given cellular target; they may or may not have therapeutic value at all.

Unfortunately, chemical space is vast. It has been estimated that there exists, theoretically, more chemicals than there are actual molecules in the universe. And only a small sliver of the potential chemicals can be physically tested.

Researchers to validate V-SYNTHES, a new type of computational method that allows scientists to first identify the best combinations of chemical building blocks called synthons – hypothetical units within molecules – to serve as seeds that can grow into a hierarchy of molecules with the best predicted ability to bind to the receptor targets. This approach allows researchers to computationally test billions of compounds against a therapeutic target.

As described in their Nature paper, scientists tested 11 billion theoretical compounds against a cannabinoid receptor (CB2) that marijuana's active ingredient THC targets.

https://www.nature.com/articles/s41586-021-04220-9

https://www.med.unc.edu/pharm/scientists-unveil-drug-discovery-tool...

https://researchnews.cc/news/10594/Scientists-unveil-drug-discovery...

How organs evolve

Fuel Cell Cars

Chasing an Asteroid's Shadow

Harnessing viruses to fight bacteria and reduce antibiotic use

New research has moved a step closer to harnessing viruses to fight bacterial infection, reducing the threat of antibiotic resistance.

A growing number of infections, including pneumonia, tuberculosis, gonorrhea, and salmonellosis, are developing antibiotic resistance, which means they becoming harder to treat, resulting in higher death rates, longer hospital stays and higher costs.

Phage therapy is the concept of using viruses (known as phage) that are harmless to humans to kill bacteria. Phage therapy can be used in combination with antibiotics to cure infections more effectively, and reduce the opportunity for bacteria to develop antibiotic resistance. However, bacteria can also evolve resistance to phages.

Part 1

The new study by the University of Exeter, published in Cell Host Microbe, has cast new light on how to best combine antibiotics and phage therapy. Researchers conducted laboratory experiments on Pseudomonas aeruginosa a bacterium which causes disease in immunocompromised and cystic fibrosis patients. They exposed the bacterium to eight types of antibiotics—and found differences in the mechanisms by which the bacteria evolve resistance to phages, which affect how harmful they are.

Viruses penetrate molecules on the cell surface to infect bacteria. Like the human immune system, bacteria have their own CRISPR defense system, made up of proteins that fight off infection. As in human immune responses, this means that the virus infects the bacteria, and is then killed. In the process, the bacteria's CRISPR system learns to recognize and attack the virus in future.

However, the bacteria have a second defense option. They can also change their own cell surface to ward off infection, losing the receptor to which phages normally attach. This option comes with a cost to bacteria—the bacteria become less virulent, meaning they no longer cause disease, or the disease becomes less severe.

In the study, four of the eight antibiotics tested caused a dramatic increase in the levels of CRISPR-based immunity. These antibiotics are all bacteriostatic—they do not directly kill cells  but act by slowing down cell growth.

 Phage therapy could be an important part of the toolkit, in reducing antibiotic use, and in using them in combination to increase their efficiency. We found that by changing the type of antibiotics that are used in combination with phage, we can manipulate how bacteria evolve phage resistance, increasing the chances that treatment is effective. These effects should be considered during phage-antibiotic combination therapy, given their important consequences for pathogen virulence.

The researchers show that the effect of bacteriostatic antibiotics triggering CRISPR-Cas immunity results from slower phage replication inside the cell, which provides more time for the CRISPR-Cas system to acquire immunity and clear the phage infection. The research therefore identifies the speed of phage replication as a crucial factor controlling the possibility for CRISPR-Cas systems to defend against viruses.

Part 2

Bacteriostatic antibiotics promote CRISPR-Cas adaptive immunity by enabling increased spacer acquisition, Cell Host Microbe, 2021.

https://phys.org/news/2021-12-closer-harnessing-viruses-bacteria-an...

Part 3

Your seat on public transportation determines level of exposure to exhaled droplets

The COVID-19 pandemic has revealed the urgency of understanding how public transportation ventilation systems transmit viruses and how exhaled droplets evolve in ventilated spaces. Researchers have wondered if those ventilation systems can be improved to mitigate virus transmission.

In Physics of Fluids, researchers at IBM Research Europe developed a model with an unprecedented level of detail and focused on conditions that are more characteristic of asymptomatic transmission. The multiphysics model involved air and droplet dynamics, heat transfer, evaporation, humidity, and effects of ventilation systems.

"By visualizing the droplets and the flow, you realize the number of physical phenomena taking place around us that go unnoticed, such as the complex interactions between natural body plumes, exhalation, and ventilation.

Part 1

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When it comes to preventing risk of infection, this is precisely what makes it difficult to contain."

The researchers analyzed what happens when speech droplets are exhaled from a row of sitting passengers in a ventilated space, like those in public transportation vehicles. In some of these systems, air is injected at the top and extracted at the bottom through the vents near the window seats.

This generates an internal recirculation to enhance thermal comfort and remove contaminants, but the researchers were interested in whether certain seat positions affect the circulation adversely.

The team found droplets from the window seat rose more and invaded the space of other passengers to a lesser extent shortly after exhalation. Moreover, droplets released from the middle seat contaminated the aisle passengers more, indicating the downward flow of personal ventilation in aisle seats could move droplets down and increase the risk of infection.

Droplets released from the aisle were dragged down by the ventilation system immediately.

Part 2

The researchers modeled various scenarios in close detail, such as a situation where passengers in different seats were pronouncing a vowel for a few seconds. By creating detailed representation of the flow field and tracking every single droplet, they were able to reconstruct their ventilation paths.

In the future, the team will reproduce conditions that more closely represent the diverse human activity on public transport vehicles to help inform actions, design, and operation of future ventilation systems for safer environments.

"These high-resolution simulations were focused on public transportation vehicles, but they could be extended to commercial or residential buildings, health care facilities, offices, or schools.

"Numerical investigation of droplets in a cross-ventilated space with sitting passengers under asymptomatic virus transmission conditions" Physics of Fluids, DOI: 10.1063/5.0070625

https://phys.org/news/2021-12-seat-exposure-exhaled-droplets.html?u...

Part 3

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No mountain is high enough for microplastics

From Mount Everest to the Mariana Trench, microplastics are everywhere—even high in the Earth's troposphere where wind speeds allow them to travel vast distances, a study showed recently. 

Microplastics are tiny fragments—measuring less than 5 millimeters—that come from packaging, clothing, vehicles and other sources and have been detected on land, in water and in the air.

Scientists sampled air 2,877 meters above sea level at the Pic du Midi Observatory in the French Pyrenees, a so-called "clean station" because of the limited influence exerted on it by the local climate and environment.

There they tested 10,000 cubic meters of air per week between June and October of 2017 and found all samples contained microplastics.

Using weather data they calculated the trajectories of different air masses preceding each sample and discovered sources as far away as North Africa and North America.

The study's main author Steve Allen of Dalhousie University in Canada told AFP that the particles were able to travel such distances because they were able to reach great altitudes.

The research also points to microplastic sources in the Mediterranean Sea and the Atlantic Ocean.

Once in the air or ocean, it is moving around and around in an indefinite cycle.

Steve Allen, Evidence of free tropospheric and long-range transport of microplastic at Pic du Midi Observatory, Nature Communications (2021). DOI: 10.1038/s41467-021-27454-7. www.nature.com/articles/s41467-021-27454-7

https://phys.org/news/2021-12-microplastic-pristine-pyrenees-mounta...

What is the UV index? 

You've probably seen the UV index in the day's weather forecast, and you know it tells you when you need to cover up and wear sunscreen.

The Sun showers Earth with light at a huge spectrum of different wavelengths, and each wavelength can have a slightly different effect on human skin.

An important part of the spectrum is ultraviolet or UV radiation: light with wavelengths too short for our eyes to see, from around 400 nanometres to 10 nanometres.

There are two important kinds of UV radiation: UV-A, with wavelengths from 400–315 nanometres, and UV-B with wavelengths from 315–280 nanometres. (Shorter wavelengths are called UV-C, but are mainly blocked by the atmosphere so we don't need to worry about it.)

UV-A and UV-B both contribute to skin damage, aging and skin cancer. But UV-B is the more dangerous: it is the major cause of sunburn, cataracts and skin cancer.

The UV index tells you how much ultraviolet radiation is around at ground level on a given day, and its potential to harm your skin.

UV radiation is a component of sunlight that can cause tanning and sunburn in the short term. In the longer term, too much exposure to UV can cause cataracts and skin cancer.

In 2002, the World Health Organization devised the UV index in an effort to make people around the world more aware of the risks.

The index boils down several factors into a single number that gives you an idea of how careful you need to be in the sun. A score of 1 or 2 is low, 3–5 is moderate, 6 or 7 is high, 8–10 is very high, and 11 and above is extreme.

Part 1

The UV index takes into account how much UV radiation of different wavelengths is around and how each of those wavelengths affects our skin.

ARPANSA has a network of sensors around Australia measuring sunlight at different wavelengths to determine the UV index, with the information available online in real time.

This data is combined with other information about location, cloud cover and atmospheric conditions to produce maps and forecasts of the UV index for the whole country.

The UV index you see reported is usually the daily maximum—that's the highest it will be all day.

How high it gets depends on lots of factors, including your location, the time of year, the amount of cloud cover, and ozone and pollution in the atmosphere.

The index tends to be higher closer to the Equator and at high altitudes, as the sunlight has to pass through less air before it reaches the ground.

https://theconversation.com/what-is-the-uv-index-an-expert-explains...

Part 2

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