Comment

Comment by Dr. Krishna Kumari Challa 13 hours ago

In this new study, scientists  used both single-cell and single-nucleus sequencing techniques along with advanced imaging to analyze human muscle samples from 17 individuals aged 20 to 75.

They discovered that genes controlling ribosomes, responsible for producing proteins, were less active in muscle stem cells from aged samples. This impairs the cells' ability to repair and regenerate muscle fibers as we age. Further, non-muscle cell populations within these skeletal muscle samples produced more of a pro-inflammatory molecule called CCL2, attracting immune cells to the muscle and exacerbating age-related muscle deterioration.

Age-related loss of a specific fast-twitch muscle fiber subtype, key for explosive muscle performance, was also observed. However, they discovered for the first time several compensatory mechanisms from the muscles appearing to make up for the loss. These included a shift in slow-twitch muscle fibers to express genes characteristic of the lost fast-twitch subtype, and increased regeneration of remaining fast-twitch fiber subtypes.

The researchers  also identified specialized nuclei populations within the muscle fibers that help rebuild the connections between nerves and muscles that decline with age. Knockout experiments in lab-grown human muscle cells by the team confirmed the importance of these nuclei in maintaining muscle function.

With these new insights into healthy skeletal muscle aging, researchers all over the world can now explore ways to combat inflammation, boost muscle regeneration, preserve nerve connectivity, and more. Discoveries from research like this have huge potential for developing therapeutic strategies that promote healthier aging for future generations.

 Human skeletal muscle aging atlas, Nature Aging (2024). DOI: 10.1038/s43587-024-00613-3

Part 2

Comment by Dr. Krishna Kumari Challa 13 hours ago

Human muscle map reveals how we try to fight effects of aging at cellular and molecular levels

How muscle changes with aging and tries to fight its effects is now better understood at the cellular and molecular level with the first comprehensive atlas of aging muscles in humans.

Researchers applied single-cell technologies and advanced imaging to analyze human skeletal muscle samples from 17 individuals across the adult lifespan. By comparing the results, they shed new light on the many complex processes underlying age-related muscle changes.

The atlas, published April 15 in Nature Aging, uncovers new cell populations that may explain why some muscle fibres age faster than others. It also identifies compensatory mechanisms the muscles employ to combat aging.

The findings offer avenues for future therapies and interventions to improve muscle health and quality of life as we age.

This study is part of the international Human Cell Atlas initiative to map every cell type in the human body, to transform understanding of health and disease.

As we age, our muscles progressively weaken. This can affect our ability to perform everyday activities like standing up and walking. For some people, muscle loss worsens, leading to falls, immobility, a loss of autonomy and a condition called sarcopenia. The reasons why our muscles weaken over time have remained poorly understood till now.

Part 1

Comment by Dr. Krishna Kumari Challa 13 hours ago

Evolution's recipe book: How 'copy paste' errors led to insect flight, octopus camouflage and human cognition

Seven hundred million years ago, a remarkable creature emerged for the first time. Though it may not have been much to look at by today's standards, the animal had a front and a back, a top and a bottom. This was a groundbreaking adaptation at the time, and one which laid down the basic body plan which most complex animals, including humans, would eventually inherit.

The inconspicuous animal resided in the ancient seas of Earth, likely crawling along the seafloor. This was the last common ancestor of bilaterians, a vast supergroup of animals including vertebrates (fish, amphibians, reptiles, birds, and mammals), and invertebrates (insects, arthropods, mollusks, worms, echinoderms and many more).

To this day, more than 7,000 groups of genes can be traced back to the last common ancestor of bilaterians, according to a study of 20 different bilaterian species including humans, sharks, mayflies, centipedes and octopuses. The findings were made by researchers at the Centre for Genomic Regulation (CRG) in Barcelona and are published today in the journal Nature Ecology & Evolution.

Remarkably, the study found that around half of these ancestral genes have since been repurposed by animals for use in specific parts of the body, particularly in the brain and reproductive tissues. The findings are surprising because ancient, conserved genes usually have fundamental, important jobs that are needed in many parts of the body.

When the researchers took a closer look, they found a series of serendipitous "copy paste" errors during bilaterian evolution were to blame. For example, there was a significant moment early in the history of vertebrates. A bunch of tissue-specific genes first appeared coinciding with two whole genome duplication events.

Animals could keep one copy for fundamental functions, while the second copy could be used as raw material for evolutionary innovation. Events like these, at varying degrees of scale, occurred constantly throughout the bilaterian evolutionary tree.

The authors of the study found many examples of new, tissue-specific functions made possible by the specialization of these ancestral genes.

The specialization of ancestral genes also laid some foundations for the development of complex nervous systems

Evolution of tissue-specific expression of ancestral genes across vertebrates and insects, Nature Ecology & Evolution (2024). DOI: 10.1038/s41559-024-02398-5

Comment by Dr. Krishna Kumari Challa 14 hours ago

The study also found that different bird species have different impacts in terms of seed dispersal. Smaller birds disperse more seeds, but they can only spread small seeds from trees with lower carbon storage potential. In contrast, larger birds such as the Toco toucan or the Curl-crested jay disperse the seeds of trees with a higher carbon storage potential. The problem is that the larger birds are less likely to move across highly fragmented landscapes.
This crucial information enables us to pinpoint active restoration efforts—like tree planting—in landscapes falling below this forest cover threshold, where assisted restoration is most urgent and effective.
Allowing larger frugivores to move freely across forest landscapes is critical for healthy tropical forest recovery.
This study demonstrates that especially in tropical ecosystems seed dispersal mediated by birds, plays a fundamental role in determining the species that can regenerate.

Frugivores enhance potential carbon recovery in fragmented landscapes, Nature Climate Change (2024). DOI: 10.1038/s41558-024-01989-1

Comment by Dr. Krishna Kumari Challa 14 hours ago

Tropical forests can't recover naturally without fruit eating birds, carbon recovery study shows

New research illustrates a critical barrier to natural regeneration of tropical forests. Their models—from ground-based data gathered in the Atlantic Forest of Brazil—show that when wild tropical birds move freely across forest landscapes, they can increase the carbon storage of regenerating tropical forests by up to 38%.

Fruit eating birds such as the Red-Legged Honeycreeper, Palm Tanager, or the Rufous-Bellied Thrush play a vital role in forest ecosystems by consuming, excreting, and spreading seeds as they move throughout a forested landscape.

Between 70% to 90% of the tree species in tropical forests are dependent on animal seed dispersal. This initial process is essential for allowing forests to grow and function. While earlier studies have established that birds are important for forest biodiversity, researchers now have a quantitative understanding of how they contribute to forest restoration. The new study, published in the journal Nature Climate Change provides evidence of the important contribution of wild birds (frugivores) in forest regeneration. Researchers compared the carbon storage potential that could be recovered in landscapes with limited fragmentation, with that of highly fragmented landscapes. Their data shows that highly fragmented landscapes restrict the movement of birds, thereby reducing the potential of carbon recovery by up to 38%.
Across the Atlantic Forest region in Brazil, the researchers found that it is critical to maintain a minimum of 40% forest cover. They also find that a distance of 133 meters (approximately 435 feet) or less between forested areas ensures that birds can continue to move throughout the landscape and facilitate ecological recovery.

Part 1

Comment by Dr. Krishna Kumari Challa yesterday

How did this unusual exception emerge? What distinguishes the enzyme from all others, causing it to form a fractal shape? Teaming up with structural biologist at the university of Marburg, the team eventually managed to determine the molecular structure of this assembly using electron microscopy, which illuminated how it achieves its fractal geometry.
It now became clear how exactly this protein manages to assemble into a fractal: Normally, when proteins self-assemble, the pattern is highly symmetrical: each individual protein chain adopts the same arrangement relative to its neighbors. Such symmetrical interactions always lead to patterns that become smooth on large scales.

The key to the fractal protein was that its assembly violated this rule of symmetry. Different protein chains made slightly different interactions at different positions in the fractal. This was the basis for forming the Sierpiński triangle, with its large internal voids, rather than a regular lattice of molecules.

Self-assembly is often used by evolution to regulate enzymes, but in this case the cyanobacterium that this enzyme is found in does not seem to care much whether or not its citrate synthase can assemble into a fractal.
When the team genetically manipulated the bacterium to prevent its citrate synthase from assembling into the fractal triangles, the cells grew just as well under a variety of conditions. This prompted them to wonder whether this might just be a harmless accident of evolution. Such accidents can happen when the structure in question isn't too difficult to construct.
To test their theory, the team recreated the evolutionary development of the fractal arrangement in the laboratory. To do this, they used a statistical method to back-calculate the protein sequence of the fractal protein as it was millions of years ago.

By then producing these ancient proteins biochemically they were able to show that the arrangement arose quite suddenly through a very small number of mutations and was then immediately lost again in several cyanobacterial lineages, so that it only remained intact in this single bacterial species.
The fact that something so complex-looking as a molecular fractal could emerge so easily in evolution suggests that more surprises and much beauty may still lie hidden in so far undiscovered molecular assemblies of many biomolecules.

Franziska L. Sendker et al, Emergence of fractal geometries in the evolution of a metabolic enzyme, Nature (2024). DOI: 10.1038/s41586-024-07287-2

Part 2

Comment by Dr. Krishna Kumari Challa yesterday

Discovery of the first fractal molecule in nature

An international team of researchers has stumbled upon the first regular molecular fractal in nature. They discovered a microbial enzyme—citrate synthase from a cyanobacterium—that spontaneously assembles into a pattern known as the Sierpinski triangle. Electron microscopy and evolutionary biochemistry studies indicate that this fractal may represent an evolutionary accident.

The study is published in Nature.

Snowflakes, fern leaves, romanesco cauliflower heads: many structures in nature have a certain regularity. Their individual parts resemble the shape of the whole structure. Such shapes, which repeat from the largest to the smallest, are called fractals. But regular fractals that match almost exactly across scales, as in the examples above, are very rare in nature.

Molecules also have a certain regularity. But if you look at them from a great distance, you can no longer see any signs of this. Then you see smooth matter whose features no longer match those of the individual molecules. The degree of fine structure we see depends on our magnification—in contrast to fractals, where self-similarity persists at all scales. In fact, regular fractals at the molecular level are completely unknown in nature till now.

This is somewhat surprising. After all, molecules can assemble themselves into all sorts of wonderful shapes. Scientists have extensive catalogues of self-assembled complex molecular structures. However, there has never been a regular fractal among them. It turns out that almost all regular-looking self-assemblies lead to the kind of regularity that becomes smooth on large scales.

Researchers now discovered a microbial enzyme—citrate synthase from a cyanobacterium—that spontaneously assembles into a regular fractal pattern known as the Sierpiński triangle. This is an infinitely repeating series of triangles made up of smaller triangles.

The protein makes these beautiful triangles and as the fractal grows, we see these larger and larger triangular voids in the middle of them, which is totally unlike any protein assembly we've ever seen before.

Part 1

Comment by Dr. Krishna Kumari Challa on Sunday

They studied plastic, paper and plant-based straws obtained in the USA. It showed that paper and plant-based straws contain PFAS (Per- and polyfluoroalkyl substances).

These are fluorine-based chemicals that have remarkable properties in repelling water, grease and pretty much anything. They are widely used in products designed to resist water and oil such as raincoats, furniture, cookware and food packaging.

PFAS are chemically and thermally very stable which means that almost nothing reacts or degrades them. This means they persist in the environment and will do so for thousands of years. For this reason, they have been dubbed ‘forever chemicals’.

They have been found literally everywhere from the Arctic ice to the Amazon rainforest. They also make it into the human body by migrating from packaging into our food and drink.

Once PFAS are in our blood they are associated with a number of health effects such as liver and kidney disease. There is also evidence that PFAS may lead to increased risk of high blood pressure in pregnant ..., and decreased immune response. Some studies show an association of PFAS exposure with kidney and testicular cancer. They have been shown to harm wildlife too.

All the evidence points to paper and plant-based straws having significant PFAS in them. PFAS have also been found in plastic straws but at lower levels. The only material determined to be free of PFAS was stainless steel.

Stainless steel straws  are reusable and easy to clean. So I use only them.

Please use only steel straws.

**

Comment by Dr. Krishna Kumari Challa on Sunday

Paper straws contain more potentially toxic ‘forever chemicals’ than plastic. Should you give them up?

Many paper straws tested by scientists contain significant amounts of chemicals that don't biodegrade.

If you have been following the scientific debate on the effect of different types of straw on the environment and human health, you’ll know that the decision whether to use a straw or not  is not an easy one.

Pictures of plastic straws causing the death of turtles and other aquatic life were published in national newspapers. Governments scrambled to justify they had let plastic pollution reach such an appalling state of affairs – they singled out plastic straws as something that they could ban. And so they did, ignoring those of us who warned about the unexpected consequences.

A study by a European research group showed there are significant health and environmental risks associated with the pape... that have replaced plastic straws.

Scientists observing the performance of the new paper straws found themselves puzzled by their ability to repel liquids and resist getting soggy. Could there be an additive, they wondered, that might be allowing paper straws to perform so well?

Part 1

Comment by Dr. Krishna Kumari Challa on Saturday

The circadian rhythm is defined as physical, mental, and behavioral changes that organisms, such as humans, experience over 24-hour cycles. One of the most famous behaviors impacted by the circadian rhythm is sleep—people tend to feel sleepy at the same time every night. However, it has also been noted that the circadian rhythm can be impacted by the lunar cycle—people have been found to go to bed later and sleep less, for example, on nights before a full moon.

To learn more about the ovarian cycle-controlling mechanism, the research team obtained medical records for over 3,000 women living in Europe and North America, which held data relating to 27,000 ovarian cycles. The team tracked the first day of each cycle for all the women under study. In doing so, they found little correlation between cycle start time and lunar cycling.

The researchers did find something else, though. Many examples of what they describe as phase jumps—where something disturbs the timing of a cycle for a given woman, and the body responds by changing the clock rhythm over several months to bring the cycle back to its original norm. They compare it to how the circadian rhythm reacts to people experiencing jet lag. This, they suggest, indicates that the circadian rhythm is much more likely the mechanism that controls ovarian cycling.

 René Ecochard et al, Evidence that the woman's ovarian cycle is driven by an internal circamonthly timing system, Science Advances (2024). DOI: 10.1126/sciadv.adg9646

Part 2

• ‹ Previous
• 1
• 2
• 3
• …
• 836
• Next ›
• Page