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Comment by Dr. Krishna Kumari Challa on May 25, 2024 at 9:00am

How air pollution affects the digestive system

Fine air particles, less than 2.5 micrometers in diameter (PM_2.5), are a major air pollutant linked to various health problems. These particles can travel deep into the lungs and even enter the bloodstream when inhaled. Recent research suggests a major health concern: PM_2.5 exposure can also damage the digestive system, including the liver, pancreas, and intestines.

The work is published in the journal eGastroenterology. This recent research has been focused on how PM2.5 exposure triggers stress responses within the digestive system's cells. These stress responses involve specialized subcellular structures within cells called organelles, such as the endoplasmic reticulum (ER), mitochondria, and lysosomes. When PM2.5 disrupts these organelles, it creates a chain reaction within the cells that can lead to inflammation and other harmful effects.

The liver, a major organ for detoxification and metabolism, is particularly susceptible to PM_2.5 damage. Studies have shown that PM_2.5 exposure can lead to a cascade of problems within the liver, including inflammation, stress responses, and damage to the organelles, and disrupted energy metabolism. These effects can contribute to the development of non-alcoholic fatty liver disease (NASH) and type 2 diabetes.

PM_2.5 exposure does not stop at the liver. It can also harm the pancreas and intestines. Studies have linked PM_2.5 to an increased risk of pancreatic impairment in people with diabetes, as well as damage to intestinal cells and an increase in their permeability. This increased permeability can lead to a variety of digestive issues.

Researchers are exploring whether dietary or pharmaceutical interventions can mitigate PM_2.5 damage. Interestingly, some studies suggest that certain nutrients, like monounsaturated fatty acids and vitamins, may offer some protection against the harmful effects of PM_2.5.

Part 1

Comment by Dr. Krishna Kumari Challa on May 25, 2024 at 7:09am

Replicated, long-term studies from natural populations, including research on the famous Darwin's finches, are rare.

Because most of this work is restricted to one or few populations, it is difficult to draw inferences on repeatability among multiple evolutionary independent populations.

Such studies are challenging to implement not only because they take concerted effort, but also because you can't rush time.

Patrik Nosil et al, Evolution repeats itself in replicate long-term studies in the wild, Science Advances (2024). DOI: 10.1126/sciadv.adl3149. www.science.org/doi/10.1126/sciadv.adl3149

Part 2

Comment by Dr. Krishna Kumari Challa on May 25, 2024 at 7:08am

Biologists observe recurring evolutionary changes, over time, in stick insects

A long-standing debate among evolutionary scientists goes something like this: Does evolution happen in a predictable pattern or does it depend on chance events and contingency? That is, if you could turn back the clock, as celebrated scientist Stephen Jay Gould (1941–2002) described in his famous metaphor, "Replaying the Tape of Life," would life on Earth evolve, once again, as something similar to what we know now, or would it look very, very different?

Now researchers  report evidence of repeatable evolution in populations of stick insects in the paper "Evolution repeats itself in replicate long-term studies in the wild," in Science Advances. 

The team examined three decades of data on the frequency of cryptic color-pattern morphs in the stick insect species Timema cristinae in ten naturally replicate populations in California. T. cristinae is polymorphic in regard to its body colour and pattern. Some insects are green, which allows the wingless, plant-feeding insect to blend in with California lilac (Ceanothus spinosus) shrubs. In contrast, green striped morphs disappear against chamise (Adenostoma fasciculatum) shrubs.

Hiding among the plants is one of T. christinae's key defenses as hungry birds, such as scrub jays, are insatiable predators of the stick insects.

Bird predation is a constant driver shaping the insects' organismal traits, including coloration and striped vs. non-striped.

Scientists observed predictable 'up-and-down' fluctuations in stripe frequency in all populations, representing repeatable evolutionary dynamics based on standing genetic variation.

A field experiment demonstrates these fluctuations involved negative frequency-dependent natural selection (NFDS), where cryptic colour patterns are more beneficial when rare rather than common. This is likely because birds develop a 'search image' for very abundant prey.

At short time scales, evolution involving existing variations can be quite predictable. You can count on certain drivers always being there, such as birds feeding on the insects.

But at longer time scales, evolutionary dynamics become less predictable.

The populations might experience a chance event, such as a severe drought or a flooding event, that disrupts the status quo and thus, the predictable outcomes.

On long time scales, a new mutation in the species could introduce a rare trait. That's about as close to truly random as you can get.

Rare things are easily lost by chance, so there's a strong probability a new mutation could disappear before it gains a stronghold. 

Indeed, another species of Timema stick insect that also feeds on chamise either never had or quickly lost the mutations making the cryptic stripe trait. Thus, the evolution of stripe is not a repeatable outcome of evolution at this long scale.

Part 1

Comment by Dr. Krishna Kumari Challa on May 24, 2024 at 12:41pm

How gut microbes drive tumour growth
Scientists have long known that obese people have poorer cancer survival rates. Now they have some idea why. A high-fat diet increases the number of Desulfovibrio bacteria in the gut of mice. These release leucine, an amino acid, which encourages the proliferation of a kind of cell that suppresses the immune system. With a suppressed immune system, tumour growth can increase. In breast cancer patients, poorer outcomes were seen for women with higher body-mass index, who also had higher levels of Desulfovibrio bacteria in their gut and leucine in their blood. It’s a provocative finding that will open up new avenues that we should be thinking about.

https://www.pnas.org/doi/10.1073/pnas.2306776121?utm_source=Live+Au...

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Biggest risk factors for disease spread A meta-analysis of five ways that humanity’s environmental footprint spreads disease — biodiversity loss, chemical pollution, climate change, invasive species and deforestation/urbanization — suggests that conserving biodiversity, controlling invasive species and lowering greenhouse-gas emissions would reduce disease spread the most. This evidence can be used in international policy to spur action on climate change and biodiversity loss due to their negative impacts on disease.

https://www.nature.com/articles/s41586-024-07380-6?utm_source=Live+...

Comment by Dr. Krishna Kumari Challa on May 24, 2024 at 11:52am

Micro-ballistics research has shown metals hardening as they are heated, under extreme strain rates.

Comment by Dr. Krishna Kumari Challa on May 24, 2024 at 11:39am

Strange  bacteria defy textbooks by writing new genes

Bacterial defensive systems scramble the standard workflow of life.

Genetic information usually travels down a one-way street: genes written in DNA serve as the template for making RNA molecules.... That tidy textbook story got a bit complicated in 1970 when scientists discovered that some viruses have enzymes called reverse transcriptases, which scribe RNA into DNA — the reverse of the usual traffic flow.

Now, scientists have discovered an even weirder twist. A bacterial version of reverse transcriptase reads RNA as a template to make completely new genes written in DNA. These genes are then transcribed back into RNA, which is translated into protective proteins when a bacterium is infected by a virus. By contrast, viral reverse transcriptases don’t make new genes; they merely transfer information from RNA to DNA.

This is a crazy molecular biology!

https://www.nature.com/articles/d41586-024-01477-8?utm_source=Live+...

Part 2

The discovery that reverse transcriptase — which has previously been known only for copying genetic material — can create completely new genes has left other researchers gobsmacked.

Comment by Dr. Krishna Kumari Challa on May 24, 2024 at 11:37am

Bizarre bacteria scramble workflow of life
Bacteria have stunned biologists by reversing the usual flow of information. Typically genes written in DNA serve as the template for making RNA molecules, which are then translated into proteins. Some viruses are known to have an enzyme that reverses this flow by scribing RNA into DNA. Now scientists have found bacteria with a similar enzyme that can even make completely new genes — by reading RNA as a template. These genes create protective proteins when a bacterium is infected by a virus. It should change the way we look at the genome.

https://www.biorxiv.org/content/10.1101/2024.05.08.593200v1

Part 1

Comment by Dr. Krishna Kumari Challa on May 24, 2024 at 11:18am

Atomic-resolution imaging shows why ice is so slippery

A team of physicists  has uncovered the reason behind the slipperiness of ice. In their study, published in the journal Nature, the group used atomic force microscopy to get a closer look at the surface of ice at different temperatures.

Prior research and day-to-day experiences  have shown that ice is slippery, even when temperatures are well below the freezing point. Research has suggested this is because of a pre-melt coating that develops at the surface, which serves as a lubricant.

In this new study, the research team used an atomic force microscope fitted with a carbon monoxide atom on its tip to get a better look at the structure of normal ice and its pre-melt coating.

The researchers began by chilling ice inside the microscope chamber to -150°C and then using the microscope to look at its atomic structure. They could see that the internal ice (known as ice Ih), and the ice at the surface were different.

The ice Ih, as expected, was arranged in stacked hexagons. The ice on the surface, by contrast, was only partially hexagonal. The researchers also found defects in the ice at the border between the two types of ice that occurred as the different ice shapes met one another.

The researchers then raised the temperature in the chamber slightly, which resulted in more disorder as the differences in shape became more pronounced. The team then created a simulation showing how such disorder would impact the surface as a whole unit—it showed the disorder expanding all the way across the surface, giving the ice a liquid-like appearance that would be slippery if trod upon.

 Jiani Hong et al, Imaging surface structure and premelting of ice Ih with atomic resolution, Nature (2024). DOI: 10.1038/s41586-024-07427-8

Comment by Dr. Krishna Kumari Challa on May 24, 2024 at 11:05am

And the team think that the new device could help speed up the search for notoriously elusive particles known as axions, which are so far only theoretical, but proposed by many as the secret ingredient of mysterious dark matter.

 The squeezed noise itself could even be used in future quantum computers.

It turns out that squeezed vacuum noise is an ingredient to build a certain type of quantum computer. Excitingly, the level of squeezing they've achieved is not far off the amount needed to build such a system.

 Arjen Vaartjes et al, Strong microwave squeezing above 1 Tesla and 1 Kelvin, Nature Communications (2024). DOI: 10.1038/s41467-024-48519-3

Part 2

Comment by Dr. Krishna Kumari Challa on May 24, 2024 at 11:05am

How a world record 'squeeze' could offer comfort for dark matter hunters

Quantum engineers have developed a new amplifier that could help other scientists search for elusive dark matter particles.

Imagine throwing a ball. You'd expect science to be able to work out its exact speed and location at any given moment, right? Well, the theory of quantum mechanics says you can't actually know both with infinite precision at the same time.

It turns out that as you more precisely measure where the ball is, knowing its speed becomes less and less accurate.

This conundrum is commonly referred to as Heisenberg's uncertainty principle, named after the famous physicist Werner Heisenberg who first described it.

For the ball, this effect is imperceptible, but in the quantum world of small electrons and photons the measurement uncertainty suddenly becomes very significant.

That's the problem being addressed by a team of engineers who have developed an amplifying device that performs precise measurements of very weak microwave signals, and it does so through a process known as squeezing.

Squeezing involves reducing the certainty of one property of a signal in order to obtain ultra-precise measurements of another property.

The team of researchers  have significantly increased the accuracy of measuring signals at microwave frequencies, like those emitted by your mobile phone, to the point of setting a new world record.

The precision of measuring any signal is fundamentally limited by noise. Noise is the fuzziness that creeps in and masks signals, which is something you may have experienced if you've ever ventured out of range when listening to AM or FM radio.

However, uncertainty in the quantum world means there is a limit as to how low noise can be made in a measurement. 

Even in a vacuum, a space void of everything, the uncertainty principle tells us we must still have noise. We call this 'vacuum' noise. For many quantum experiments, vacuum noise is the dominant effect that prevents us from making more precise measurements.

The squeezer produced by the research team now can beat this quantum limit.

The device amplifies noise in one direction, so that noise in another direction is significantly reduced, or 'squeezed.' Think of the noise as a tennis ball, if we stretch it vertically, then it must reduce along the horizontal to maintain its volume. Researchers  can then use the reduced part of the noise to do more precise measurements.

They showed that the squeezer is able to reduce noise to record low levels.

Squeezing is very difficult at microwave frequencies because the materials used tend to destroy the fragile squeezed noise quite easily.

What they've done is a lot of engineering in order to remove sources of loss, which means utilizing very high-quality superconducting materials to build the amplifier.

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